mitchMEGA

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** MEGA ** MEGA is another program that was used to align gene sequences of different variants of alpha synuclein. These genetic sequences can also be converted to protein sequences and realigned. From nucleotide sequence alignments and protein sequence alignments a variety of phylogenetic trees can be made based on different ways to analyze the data. The “best fit” phylogenetic trees were chosen based on bootstrap analysis.

__ Nucleotide Alignment __

[|Nucleotide UPGMA tree.pdf] [|Nucleotide parsimony tree.pdf] [|Nucleotide neighbor tree.pdf] [|Nucleotide Max Likelyhood tree.pdf] [|Nucleotide evolutioin tree.pdf]



__Protein Alignment__

__[|Protein UPGMA tree.pdf]__ __ [|Protein parsimony tree.pdf] __ __ [|Protien neighbor tree.pdf] __ __ [|Protien MaxLikelyhood tree.pdf] __ __ [|Protein evolution tree.pdf] __

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